NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209806_1000338

Scaffold Ga0209806_1000338


Overview

Basic Information
Taxon OID3300026529 Open in IMG/M
Scaffold IDGa0209806_1000338 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31476
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008300Metagenome / Metatranscriptome335Y
F009323Metagenome / Metatranscriptome319Y
F012566Metagenome / Metatranscriptome279Y
F031412Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209806_100033810F008300GGAGMKHFTEIENFTFLAHVLGHELGGTTPRPIRTVTDLQVPDEEFQNFVNQAKTANVTDEELADSVLDVGINWEHFVASTDNELLPDHPLKISDVLMQEKIDSLDVITEAFVREINLRSIEKQTGTKPRKSHE
Ga0209806_10003382F009323AGAAGGMLDPIVIPTLYFISVVELILQAGVFFYAYRVTKLTGSFRAWTLIIAAFALLTVRNVVGLLFELMLPTDQVSSLIESVGVTTTILSSAMNLAAGLALFLGMFGLVKRFQSQPKTP
Ga0209806_100033820F012566GGAGMEKTPDDNEVCRQILELDTAVRVAAFIEEAEVTGYAESARTKNILSQSSDLRKKIGFWVRMVTEMARQTDQLFGSTECICVTHRGLKMVTVPLSPNRSLGLSLDRSADTDYLILKIMTKFDLVRESSHTSK
Ga0209806_10003383F031412N/AMMGKLTVEEWRPVIASSLVFEKKIRRSMRGTAFLLTRVPLIVSLGGTITAAILLQMSWIIFLYPVLLFPLAILGGRRYDADLKRARLEADSRTSSVIGKDPLLQVMKKIDLMGLDDVDRLKSGRGGRRLASLPSITERIDNLQGLSSLAGFSSI
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