Scaffold Ga0209806_1000310

Overview

Basic Information

• Taxon OID: 3300026529
• Scaffold ID: Ga0209806_1000310
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32368
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019304	Metagenome / Metatranscriptome	230	Y
F020335	Metagenome	224	Y
F031422	Metagenome	182	Y
F034866	Metagenome / Metatranscriptome	173	N
F081115	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209806_100031021	F020335	GGAG	LGADIPKSMILMAGQNPYASNPWASPYPPFLLAVVGGIIRLTAGNTVLAPVTIGMISRDVRMTGLVADVLVALVVFVTLRARRLSGLSSLVPSALFLVLPSISLSPYYWFNTDVLGYPVLAVSVLALVLRRYFLGSVLLATAAIFKVHPILAIPLVLVWLIKRRGIAKTLPTIITTVSILSFGLALPAILPGYLESVLGFNLSSGFGGGTSSFTMMNLLYAVFPLVFHISLSTTVENQVWLAATAALFAAAVGIVWSRARELNPVDIVAIGLLVWLIPLRQIYTHYLVWAIVPLLMRGRLRQTLMVGSLLELANTMSSWSWNLPPDPFPILATPYGFFVTSLVYFSVSVTSLVFILRELGARRQVEPKLVDSSVFLERYPIPAVTSA
Ga0209806_100031025	F031422	N/A	LSIQVSPFYLQIAATGIPTTSPFASVIGALTRILLILCSLALLASSLRPTAWWRPLATWLGLASLTELFFSLFLLVHAGQAALLTAYGANPPTSGTILYPARILGTDLSTYQSPSLTASFNLDFYLGLLSLTIVGTGTILKMLQERGLLAASAIPGVKEFFLIPPYRHAWISTGDRDLNPLSQDPENTTDDQLLDSFGKIYRTVQPGGIISIILPSWASTLGDRFQKLLTWTGFSVEDTETIYRAPGKPETQLRFKKPLTPSGSDVQDPETTPILEQAIESESSFPDIPPQLTVSTQPDWGLTKMTKEERAMLRSALSILSKNREPVPYHELLNQVYMELVERKVQFDSARKIESTLLKHSGQELSLTEETDEQGLKSVKRWSLGTDDLSPDHEGKVSIFRKLSSHRPRVPPVMRLLKKWQRKPKYRPRASREEE
Ga0209806_100031029	F034866	N/A	MRGKTDSFSIKDISSSGVKMENNDVGQITGKYQGSFMETVSIHMKTDGTSEWEGKGIQMVGKDMVVVTGHGKGHRGPDGNVMFEGEQKYMTQSPNLSWLNTTKAWIEGAANQADQTFTAKVYAKK
Ga0209806_100031033	F081115	AGGGGG	MDVIVSVEVGILLGVLVALALFVRMAVSAGTVRSLQFQLAAFLSVWSISEIPRVLDSIGAVDLSPIRLYGLMIHAVSMVLFALFIGYRLSKFVIQGGK
Ga0209806_100031035	F019304	GAG	LGFSVITGIEGGSRVMDDRQDIDRLKQEQLVKRTRWLIWAESLVILGLLIWVSLEYQNNLFLQSWAKSNFGPVSFLLNGTLVGLYTGALLGYSVAKHAGRKSEEERILESLKKKSIN