Scaffold Ga0209806

Basic Information
Taxon OID	3300026529 Open in IMG/M
Scaffold ID	Ga0209806_1000286 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026529 Open in IMG/M

Scaffold ID

Ga0209806_1000286 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33458
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

33458

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (71.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002266	Metagenome / Metatranscriptome	576	Y
F012006	Metagenome / Metatranscriptome	284	Y
F038622	Metagenome	165	N
F047612	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209806_100028612	F047612	N/A	MMAEAKWLILFGIACYGFGALSVTADELYGIAQFYGTNGVYYFPIIGARGLWDAWVYVFTGLGFCFFLCVFSVLMLQRTKPPVKRDIQSETRTE
Ga0209806_100028622	F002266	N/A	LKAKHLIEKAEEIRVREHKLKLSLRLRTREGVYRFIHDEGLVSFLGGNELPSFISAILGRSWKPSAKGFTGWMDWWSVKISGQPVAQISREVEGREDILATRLFRRTKTFVSSRIWPILDPVVKHHRGLVQKGEILSDLEQQLLKTIGGESSIRTDRLRKKLELDGKENNSRFHRALNNLETYALIIGVEDPHPETHLHANIWQTWETRTRSGIDRTGPSYEKALAKLLEKTIDACVLAREDQVRKWFQWSADMEAIKEELLRDEAFLRAGLYLVSSRVRDVNN
Ga0209806_100028640	F012006	AGGAG	MNNIHLDETDLATQRDVITFCDHETCPTIKSNNEVNRIIAVKSNGNLHSLEAGSNHGDNSHYEPVENRAVGVLLS
Ga0209806_10002866	F038622	N/A	LIRRAAGLRLPFWLWAVIIGFVPPRLLATLDYLIVPPAGLGGYLLDTALVLSLFLVYFVYAIHFISKRMERLDDYVKQMSPDLPDSVLRIPLRLSNVLAVWVVLLLAITLLFGVPSPTAIFSEHIAVIAYFFLILASFLWVYGYSMYAIHRAGKLPLRLKPFTEDRTLGLRPFGTASLRLASIYAIFPLTWTFVELVSINVEIPGGLAITFAPIRLTDIIFSVGLILVGIVLFFLPLLSIRKRLLEAKREELSWVTPRYTTIIQGLKEQMPKTPSEGRPNQTQAMASELTMIHQIQQDIQKIQSWPFDVGVVSRLATVLVVPPILGVLARILILVFLHL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209806_1000286

Overview

Ecosystem & Geography

Associated Families

Sequences