Scaffold Ga0209806_1000156

Overview

Basic Information

• Taxon OID: 3300026529
• Scaffold ID: Ga0209806_1000156
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41777
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (47.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011480	Metagenome	290	Y
F020149	Metagenome	225	N
F023820	Metagenome	208	Y
F028467	Metagenome	191	Y
F074651	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209806_100015610	F020149	N/A	MLLILASTSRILPRNTQVGLVTIALSATLTLVVSLIGVPIGFTFMYFFGGVISTKAIKLYLFITKGTHVIGSKTSELSTVQASQGLKLRLRRQVMYFGFILAVVVPFATYEANHKDLPLISPLARTTDIVSLITQDFVTLTMTASLMLPLVALALPYFGGLRLRSIDVGPFHTTVLSTVIGASGGFSLLYTALARPIFSTLAYIFLLLIGVCWCFALGCNLAADPANRHIARTVLTEKVSSRVVSSKIWLENPPGKFREV
Ga0209806_10001564	F074651	N/A	MQVLDRAVYLRLKQLAIQRGVTVQELIRVLLIPDWLHGAEERRLKSELESRHRRSTQKRLFRTSLQKPLVSARRN
Ga0209806_100015642	F028467	AGAAG	VSSPDLEAQTTPRIKDALNAAIQRTGEEEFASLSGIETSVLERILQNEGEYVPVAIVTLACQVNRSHNDPEPARSSISECLKGAILRLPQKGNYGNTTEPGESSTRRLQRARSFKVQNRAGRIYDPAALRIAGFSVNLFTFLVLGYFLGGIVLGPLFGVGSCVGVVAAPPWITPCAGSGIGLVFGSVIGLAYTYYYFVKKL
Ga0209806_100015643	F023820	GGCGG	MSSPAKTAILRAILPNDNSAKEALVLGTPAKTESQNVILASGNLTTEAIVGRIKQLSKLRDEILQVMRQLNLAREGSPSPVEQLDYDNELESARRELDEMRNQYQEAQGRIEDVQRQLDDSKKRVAVLTEMSQTGFATDQLESEVGDFRRILGRLPVKKLEAAQKAMVSQFKDQAILAVGNKKQDTFYTLVAAPKDKSSQALQTLLLYDFAPIEIPEYKSPDSKSEIQREEDRAKALAKELGELEPQLDDLRRKAGQTLNRRLDEVVDAVMLLRGILKLGEGTQASRIYARLERVLPAETMTNLSKRGIIELESSS
Ga0209806_10001566	F011480	GAG	VDSAIGKSVKATLRFYNELRKQVLARGEVVRPPTYETFSTMARGLMDAHKQVDLDRLKNASMRELFDRTWSQKLLNYSTQKLQREAYETLIRRY