Scaffold Ga0209806

Basic Information
Taxon OID	3300026529 Open in IMG/M
Scaffold ID	Ga0209806_1000096 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026529 Open in IMG/M

Scaffold ID

Ga0209806_1000096 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50566
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (67.80%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

50566

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (67.80%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014113	Metagenome / Metatranscriptome	265	N
F016652	Metagenome / Metatranscriptome	245	Y
F025003	Metagenome	203	N
F036171	Metagenome	170	N
F037119	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209806_100009612	F025003	N/A	LEKNRTLIGRENRTMEQTPTLAILEDLVPNGIRFGASYLVEFGPDSPWYETSLTIAASALRNGARTEYHTYMHAPHEVRDSLTKLGLNVREQEQKDHLRILDTYDVMTGLAHPETPEGLRSKGREAYEHQSFDLNHWSSRVVNIIREGVAEDEKRWLHIDDNTSVMCHYTDEKLMIDIWRTRIIPYAKIRGLAMFHSVMMGIASDSFYKQFESLCDGIIEFRTSDEGGQVQHFARVRTLRGTSSDNRWRRLQLQNDGSVTMDADSKPRELGIGGWLKGPKKSR
Ga0209806_100009618	F016652	N/A	VVVEKMRRLMVLIGAVFVLLGIAAESLYIASEKVAYNGATISLNAYMISGLFLILLGFLLTLSGARISKIRIPHA
Ga0209806_100009626	F037119	GAG	LELRCVKCAVMFERTFEERRRQLNYSEGEMLQLDEKACPNGCGGDWFSIEKSHPIRKFKRRF
Ga0209806_100009648	F014113	N/A	LAATAGAFNVPLKCTPEETKHFVEPAMKEAEGFNFTGALEVVNDGLNAHPASEGLLFLRSYFCYKIADSISSELSTLPQPIQPLGEGVLMVDGAMTNQMLGRFQEIVKVLGDAEEAINEILQVNPHNNEVTAFRAYIDSKLQKLGQESENMRVTFTNTPNIAGGFCVGCRKNISFDTQTVVFRKTSSTQLEVWHLPCFKQLGNKN
Ga0209806_100009655	F036171	GAG	LDKFSSIRTIKLSYKIDQVENGWTVTTVDGTVFIFPDAREMAEWFCMVVGVPFLYKKIELDPLEEEIRKLTKATASLLA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209806_1000096

Overview

Ecosystem & Geography

Associated Families

Sequences