Scaffold Ga0209806_1000023

Overview

Basic Information

• Taxon OID: 3300026529
• Scaffold ID: Ga0209806_1000023
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77996
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (68.83%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001047	Metagenome / Metatranscriptome	793	Y
F001940	Metagenome / Metatranscriptome	614	Y
F012209	Metagenome / Metatranscriptome	282	Y
F013075	Metagenome	274	Y
F017113	Metagenome / Metatranscriptome	242	Y
F026836	Metagenome / Metatranscriptome	196	Y
F033386	Metagenome / Metatranscriptome	177	N
F035243	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209806_10000231	F035243	GAGG	LEPPISVVGGAKADLLRLVLDGVLILVLVACIVWMVRFNISQQKGERSTLKWRDMDPIRKTVAGLISVWICLNLYLSVGNELANLNVVVLPLGSIYSFYGPILVWASASSIVGLALLLSIRFPRRPVIA
Ga0209806_100002325	F012209	N/A	MTENQKPQPRLDLGLADPKSLATMVDASLKRGSSLSFALSDATVGVNLDNLGDWTITVGLSSRSDRFHQITSSLERLGFFQAAENEGTNYMLWTSILSGVGNDRIIAEQTLLLALKVLQSPGVPVYIM
Ga0209806_100002334	F001940	AGAAGG	MSAKSMKTALKGTSIEEKDAKEIISGVQAMYEKVPGFIRPMLPSLPDILKRIPSSAGKYTLNEIIQLLDWAYESGQLKK
Ga0209806_100002340	F033386	N/A	MFIFEEPRANPLRSLGVQLAKFMLSLRDESFELLQTEAEDRGISIQELIRAVIIPDWVKLNSVAKPAFETGNNGLRAYRSTPPGRDQEQMFQPAMSRIR
Ga0209806_100002351	F001047	N/A	MRETVFDESYNVREVLDDVIERVALREKLLGTAKQFAEKKREEKFTLAIRQFEGLMVDFLRLYQPILERLRSYREAMQKEITSLRSSLATVNGMLEVSKGIEGLAPRVQQLEADGQELEGRINEKMKMANKIDDLFNRIRPFQTGSQGQMGRDSLSDVLSGMPKDLFPDTPEPAKEVTRKAGSR
Ga0209806_100002354	F013075	GGAG	LPREFLPRAHSRRLGELDASNWKTLEVGRNASRIDPAIREIVSSLNSKGYRTFSSCSGGHRANLRRRFDRHESGYIAFSPPSRIPFTLYLALRGRNHDFMFEAEAVIHDGNGDRRETVYTQLDWQLVDQNTHRREYYEKLFIEMKRIIERFPGQPADQKEFLTGLLGKPRLRLGSRIVSGQMKRFTR
Ga0209806_100002358	F026836	GGAGG	LPQQPRSIRRLALGIFSIALGIVSLIAFFSVTYIAGIGFLGGFYGFILIALGVGLILPKKERTNEEIQ
Ga0209806_100002377	F017113	AGGCGG	MSLSLRVEGGNSCHVTGLNGDKGLVGHCKILAWQWAKLPRYYWRE