Scaffold Ga0209378_1001138

Overview

Basic Information

• Taxon OID: 3300026528
• Scaffold ID: Ga0209378_1001138
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19121
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004365	Metagenome / Metatranscriptome	441	Y
F030218	Metagenome / Metatranscriptome	186	Y
F034362	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209378_100113810	F030218	AGGAG	MKQTLLILGFVACLATPAAAQWLGMPAWNSPKGGTGVTFYGDYGAPNDNAGKGNAFGGRVALGVGTITLTAGVASRKVDSLNVRVTSYGGTAAFRLIGGSLIPLSVGLQLGAAHSAAVTFGQGGVLQAQTSVLAAVGLSVPLPTPGISVEPYFAPGIRYHKISNAPAGITDHQTNFGWVIGGNFSFGLVGIHVAYDSEKFDNGTHGVLGVGADVGLRLPMGL
Ga0209378_10011382	F004365	N/A	MRLRLRPALVALLLGGSGCFIFHRGKPESPPAFAVPEGEIALSVTNHNYLDVVIYVLHDGVQTRVGTVTGSSSAMFYLPGRLLGQGREIRLLGDAIGNNAYATTDILVVQQGQYIEWTLETDLRRSSVGVF
Ga0209378_10011384	F034362	GGAGG	MRSTLMLLGAISLQVACYNYLPLVRSHLVPSTYVALTLTEAGSEELAPYIGPDVLVVRGRFLTATERGLALSVAGVETRRGEILEWKGETVVVPGEFVRGMEERRVARSKTVLLAGASVAGFLMAYAAFGPGVSGTSPSGGGAGPSPR