NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209378_1000057

Scaffold Ga0209378_1000057


Overview

Basic Information
Taxon OID3300026528 Open in IMG/M
Scaffold IDGa0209378_1000057 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70616
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (77.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000186Metagenome1702Y
F043868Metagenome / Metatranscriptome155N
F066655Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0209378_100005717F066655GGCGGMITMPVISREFWLGPLGIPLAELMFPEYLKGKLSLDEWRILIEMHLLRLKAFNSGRMSRLLGMMGLMILGAFAALLIVFYIFVGRPWGPILVFPALGAAILLSLLWVGRSLRTWEFELDGNAASQFGIEQVTQVLEKMQGLDPRATLSNLVDRFSAFWTPSIGKRMEELRDKRFVGPPRPSRMPKIGFRGRAIIIVLGVAIFWGPGVVAGNLYARGQETVACVTNTCAALVIIAAVGYWSAILGALSMVPLVARRVCQARRKKKYES
Ga0209378_100005746F000186N/AMEHELALRLQVDRVNYLTQVEVPVTTADFYFPLDPRPLIVLVDGRVHPKTRQMMKDEELRTLLRKRGYRILELVYGSYTDKKGDELYREILNGLG
Ga0209378_100005754F043868GAGMESRKKRKKRLKNHPSKFKIRVRYKYHYYRWISTQDYGSFKDIYEKYKDKGFSFWCVPKGDTVFTNPGIESMGEQLDSIVSANGNYEIPSRYSERDYAGDLVVVKPFLLPETRLTPEHPVLSCESNPQKSKWYNPQARPSLRKTWKHAGELTERDWVFFPLFKGNREGDPELLYLLGLYMAEGYPTGNQVYFALGHKERQLAEQILQMAEKHWSVKGSINHHRTGLLVRFSKPALAEFMRKEFGSRAVNKKIPSWIIEQRDPQPFLEGWLKGDGFKRGNTWRLTTSSKTAAYQALLVGSRLGILPAIYTDDREARGIIQGRKVNAKPSYEIRFHQDGSKYSNKPSHVVKTENGFWVRINKIERERFSGKVCNMETPSNTYLLSFIVHNCADLPPEYSSQDGTWTGYRLDGDKTHTESTLKRYGRHKAWIDSSYKFEGKPVILVYNAD

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