Scaffold Ga0209378

Basic Information
Taxon OID	3300026528 Open in IMG/M
Scaffold ID	Ga0209378_1000057 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026528 Open in IMG/M

Scaffold ID

Ga0209378_1000057 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	70616
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	52 (77.61%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

70616

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

52 (77.61%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F043868	Metagenome / Metatranscriptome	155	N
F066655	Metagenome	126	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209378_100005717	F066655	GGCGG	MITMPVISREFWLGPLGIPLAELMFPEYLKGKLSLDEWRILIEMHLLRLKAFNSGRMSRLLGMMGLMILGAFAALLIVFYIFVGRPWGPILVFPALGAAILLSLLWVGRSLRTWEFELDGNAASQFGIEQVTQVLEKMQGLDPRATLSNLVDRFSAFWTPSIGKRMEELRDKRFVGPPRPSRMPKIGFRGRAIIIVLGVAIFWGPGVVAGNLYARGQETVACVTNTCAALVIIAAVGYWSAILGALSMVPLVARRVCQARRKKKYES
Ga0209378_100005746	F000186	N/A	MEHELALRLQVDRVNYLTQVEVPVTTADFYFPLDPRPLIVLVDGRVHPKTRQMMKDEELRTLLRKRGYRILELVYGSYTDKKGDELYREILNGLG
Ga0209378_100005754	F043868	GAG	MESRKKRKKRLKNHPSKFKIRVRYKYHYYRWISTQDYGSFKDIYEKYKDKGFSFWCVPKGDTVFTNPGIESMGEQLDSIVSANGNYEIPSRYSERDYAGDLVVVKPFLLPETRLTPEHPVLSCESNPQKSKWYNPQARPSLRKTWKHAGELTERDWVFFPLFKGNREGDPELLYLLGLYMAEGYPTGNQVYFALGHKERQLAEQILQMAEKHWSVKGSINHHRTGLLVRFSKPALAEFMRKEFGSRAVNKKIPSWIIEQRDPQPFLEGWLKGDGFKRGNTWRLTTSSKTAAYQALLVGSRLGILPAIYTDDREARGIIQGRKVNAKPSYEIRFHQDGSKYSNKPSHVVKTENGFWVRINKIERERFSGKVCNMETPSNTYLLSFIVHNCADLPPEYSSQDGTWTGYRLDGDKTHTESTLKRYGRHKAWIDSSYKFEGKPVILVYNAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209378_1000057

Overview

Ecosystem & Geography

Associated Families

Sequences