NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209059_1047062

Scaffold Ga0209059_1047062


Overview

Basic Information
Taxon OID3300026527 Open in IMG/M
Scaffold IDGa0209059_1047062 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1905
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026411Metagenome / Metatranscriptome198Y
F080432Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209059_10470621F080432AGGAGGVEIQKGERWRCQNPVCGSEILVTTSSRARGDSNPRCSCGEIMKKPYTQPGLRPFESEGEARVKLEASRN
Ga0209059_10470623F026411AGGMKGQEQKGSAAPMGTSPATECRAEFIFYARNQSRKLGSVEVLGDYTCDFRRPDWAHRWTDWNSGRNHYLNLFLGANHARELGLL

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