NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209690_1105715

Scaffold Ga0209690_1105715


Overview

Basic Information
Taxon OID3300026524 Open in IMG/M
Scaffold IDGa0209690_1105715 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1141
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013745Metagenome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0209690_11057152F013745N/ALGSDSRSPRARHRFGFSGPLTRQKKDKVTAGDILDSLTRQADLRQKLGKRDAIRLEEIAETEDLSRFQGLNPGPVSAPQVARNRSFGHLAFIFMLSGGLAVVWLFSSASKRFDLASLDGIIQKSGVQSVFANEAQVGIIALVALIGALWILRTRRVSSLPLLSTRAS

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