Scaffold Ga0209690_1024653

Overview

Basic Information

• Taxon OID: 3300026524
• Scaffold ID: Ga0209690_1024653
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2982
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025776	Metagenome / Metatranscriptome	200	Y
F053381	Metagenome	141	N
F071674	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209690_10246532	F071674	AGGAG	MTTLSETVRLPSADEFIAPVTILDAQGRVLRVVSAEDFRRARPTAPAERLDDQRPVSLRAKRAQRRARAESRLVSAPAREPHRAVAS
Ga0209690_10246535	F053381	AGGAG	MRRHLALILGAVLVLSPLEGVTQEKPIVDVKELAGTWRGWVTREQGHEPVTMIVSADGSYRAMTVDTASTEGKFYLQDGKLRYRSSRTIGTASLSVARGNSVLTMVPEEFVYGTGRAEYERVE
Ga0209690_10246536	F025776	GGAGG	MTHLLKRTLLLYLGISLVVLAGYASAQNSSDVTGTWVGSTVRGAATMTMVLKQTGNRVTGTIVGAGTDDGRVDGIVNGNTIRLWFDQGIDDTPSLNIKDNEITGMLSGTEITFRRVGRSS