NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209690_1014546

Scaffold Ga0209690_1014546


Overview

Basic Information
Taxon OID3300026524 Open in IMG/M
Scaffold IDGa0209690_1014546 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4104
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008377Metagenome / Metatranscriptome334Y
F011883Metagenome / Metatranscriptome286Y
F017029Metagenome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0209690_101454610F008377N/AMNKAKSQPWYRLYASAVVELDHQRLIERVEATEAAIHGRLRDLQYDSDHHEERQLIADAQHTLALLRRRA
Ga0209690_10145465F017029GAGGVPHIDWRKLYEAAMLEMNPDKLATCIGAAERAIAQQESRPDITELERRKLTDARSMLKTLSRIASSEGKRAAHDAALQSGQLERLG
Ga0209690_10145469F011883N/AMIDANHISERLASLKLEISDLRVANARYWSRRKEHTALDKKASALRQQRLIQIKLELADMSKRCA

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