Scaffold Ga0209690_1000671

Overview

Basic Information

• Taxon OID: 3300026524
• Scaffold ID: Ga0209690_1000671
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18281
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008019	Metagenome	340	Y
F010240	Metagenome / Metatranscriptome	306	Y
F012566	Metagenome / Metatranscriptome	279	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209690_100067111	F012566	N/A	LPSQNVGRNFESENLSTEKNRDDNTVCKQIIESDPSIRVAAFIEGAEVTGYAETARTKNVLSQSIDLRKRIGFWSSIVTEMARQTDELFGRTESVLITHKGLKMVTIPLSARRSLGLSLDRSADTEKIILKIMTKFDLGSSD
Ga0209690_100067115	F008019	GGA	LGVRKKIAVSIVLIIIVALAVWQFTSPQLLPIVGGKYSAFGPYSNRGSWTIMETMRYGSAYLAISISNVTFPRTGIGTDYSLVISDVNHTITNSIVKGFGVRVTGMSIQDSVDGSTSTWGNGHDVSDAVQSTSIFFFRTSTNHMLRFTVTFQLYDLLPLGSIPDQTVTNSFNITQIVL
Ga0209690_100067118	F010240	N/A	LLRRLLPTTKVREHLGVYLLASLSNAFLASSQYLAVSLAVASYLPVDSGTATLIAAYGPGLGIFLAVFLNSLVFQGILAALVVILSLSAVLKTGWRWAYPFSGMMVSGFVGYWLGARFLAVLEWISTLQDNRVDSSNAYASLFWFGLASTIFYLAMILVLRKSHGNLREQIGRQG