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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026524 Open in IMG/M |
| Scaffold ID | Ga0209690_1000001 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1201854 |
| Total Scaffold Genes | 1171 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 787 (67.21%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000135 | Metagenome / Metatranscriptome | 1961 | Y |
| F001877 | Metagenome / Metatranscriptome | 623 | Y |
| F008278 | Metagenome / Metatranscriptome | 336 | Y |
| F016723 | Metagenome / Metatranscriptome | 245 | Y |
| F026136 | Metagenome / Metatranscriptome | 199 | Y |
| F031626 | Metagenome / Metatranscriptome | 182 | Y |
| F055988 | Metagenome / Metatranscriptome | 138 | Y |
| F059208 | Metagenome / Metatranscriptome | 134 | Y |
| F064028 | Metagenome / Metatranscriptome | 129 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209690_10000011006 | F064028 | GGAG | MARIIVIADVPVGPNIDAPVLLDEEVKPDQLADEHASHQVIERVAWAVLDAQEVAST |
| Ga0209690_1000001158 | F000135 | N/A | MWFQLRSPELAEDFERLMREDRDIVRGSLDTVSDWRLTRPADVPGQSIGQADYVLIAEIVEVERFEQQASEHVQRLSDDLAHLVSSRGMLVVRPVL |
| Ga0209690_1000001312 | F059208 | AGGAGG | MGLLEVLLIVLVIAAVAGGIGLSPLLWLLLLVALVVFFTRGAFGYRRGGGI |
| Ga0209690_1000001398 | F001877 | N/A | VGARARIAHFGGSFEHGIVLAVHEEGRRLEVRGEAGEVREFVLSPATARFVDASSPHGPRLELLGVRGQ |
| Ga0209690_1000001620 | F031626 | AGGAG | MRSRAVLVLLATASVGLLAATSSSAASSDQKVCTWGGTPAAPTGVITLDPGITNTPSTQPTQFVATGELGGGEGCSGTLTFTGTIEAGTTCAINAPFHAKARGLPPIKTVEAPQPGAAGSQLVLLYDAQGNVVGSEQAQFLTSAVNESDPAYLDCNSPQGLTFANWSDTVELFGS |
| Ga0209690_1000001740 | F055988 | GGAGG | MADEAIEPDATAPNPRTRLMNEVAEQMDAIESDFGSDYEIGRVITIVEVTGPDGNVGLRVRAGQYPWIALGMLEFAKKSLEATMRG |
| Ga0209690_1000001934 | F016723 | AGGCGG | MCPTVLGRVQTRWSILIVPALIATVISIVTSNEGWIVLIGVYFVLGVALDTGFYPLIIRWQPPWLTFTLAAGEFVLVYILAHVLKVGLTNPEAVLLYWIAWTLAIWTKVVILPLLSLSWIENAGEFRSTDWSVAPEYQPLPISVFQPPDERSPVPQLAREFSSVHRLPAELRDLPSPSGVHRVPGAR |
| Ga0209690_1000001949 | F026136 | N/A | MRLKPTRRTHTAFFAALGLIALAAPAVASAEEIPTPTIKVKAKAVPIPGFPGTGNFYGKGAAVESTFEIEGSGYGATPQNPKGGIPPLSAVNVFLPKGVKLHPQGFAQCSEATLKSVGPSGCPKKAVASPTGSVLGEVTFGSERVPEEATLQAFFAPGGGLLFFTHGSTPVSLEIVSTGHWVRASGKYSWELKTLVPPVASVPGAPLASARKIHIKVGAAFRKHGKVVPYGTVPKKGECPHGGFFGKVEVTFGGSNSFGEFGIPPITVTKVIRVPCPKR |
| Ga0209690_1000001986 | F008278 | AGCAGG | VNVALILAGSLAILGAAIHGVGGEVLIVRKLSPGTLPSTRFGGPGATKSMLHVTWHMTTVAFLTVGSALLLSGSVLHGDSARGIGLLAAGASSGFAALAVGLPAAHTHSARSLFRHPAPAVLILTAALAWWGAL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |