Scaffold Ga0256829_1057082

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256829_1057082

Scaffold Ga0256829_1057082

Overview

Basic Information
Taxon OID	3300026518 Open in IMG/M
Scaffold ID	Ga0256829_1057082 Open in IMG/M
Source Dataset Name	Hydrothermal vent microbial communities from Lau Basin, Pacific Ocean - 131-447
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1265
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean

Source Dataset Sampling Location
Location Name	Pacific Ocean: Lau Basin
Coordinates	Lat. (^o)	-22.1802	Long. (^o)	-176.6008	Alt. (m)		Depth (m)	1918
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038196	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256829_10570822	F038196	N/A	MEERITTLRKTKTGYGHFRISVEIDGKEYHTVTTNTMAIDAAFDEDYDLNDNSGRYYETRREAQTALVDEILRANDMEL

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