Scaffold Ga0257158_1001720

Overview

Basic Information

• Taxon OID: 3300026515
• Scaffold ID: Ga0257158_1001720
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2645
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010454	Metagenome	303	Y
F028522	Metagenome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257158_10017201	F028522	AGGAGG	MERSIFAALIGGLLGITALGGMALVGSTPGATATPSSRPESDWRLLDPVTYENISVFPVVSSYGQDTSPFLTLEEGLSTGEVIVSEQGSEGLVRSRDGRRIYPP
Ga0257158_10017203	F010454	GGAG	MPEGSRQALLVASLLLAGLPASSFGQNAPAAKKLPVGPAAPQSTHYPILILAFGNDPNWSLRIGQKGPERLDRPGYPPIPLEPAEVTHEAAADSWTYHAKDTATGAVVALHLTREACTDATNDTLAGTPPPSGKYPFRAALEHAQIGSLKGCARIAAELFPKIKNQADDDEEADQKKPPAPTITNFKPPVAVAYLNSAGNVVLSRGKLKKIAAPDGAELALSHDGKKLLFTKSDSKTSPERTLVLYDFDSGKLLDLVHGLVRQAFWSPDDSRIAFLKAMDQSWQVWSFPAATPEATMLFSSQPVHSLHGWIDSHTLLATDTLNAYWLSEDNLQQAVALKDIYGSNFQITSSDTIRVHPLNSDLLLVSANYLSVPPGAPVDSVGWAAGFFLYEPRSKRRVVLCPADQSGRAAEWSHDGLQIFFNGTDSAHRPGIYRIFWDGTSLQRFLTGSNYVVGQ