NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233395_1025302

Scaffold Ga0233395_1025302


Overview

Basic Information
Taxon OID3300026511 Open in IMG/M
Scaffold IDGa0233395_1025302 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1983
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038104Metagenome / Metatranscriptome166N
F080902Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0233395_10253021F080902N/AMLKNIKRFLSKIFYCFLVVLAVLTWEDFFKSSDLNIVSNENDAISTMNNLNLIFENIFLALGTSIALVTSWIIFLPISRPLLKIPKLLLQITIIEPIKAIFGLPGEINSLNEDKEKRKAGSSKVAKAGLLMGAVALSRSSKPSKVPQAVARSGDVKNIDCHHKG
Ga0233395_10253023F038104GAGGMTKKNISEISKQIPGSFEFRIEVASACAESGIEYHTFAEQYDLDADELNQWAIDYLGEGLDDTSKNEKKDTVTSESVKDEILFDTVQHIALIKVSDDIGWATADGTAKKNLTILSNSTTFKEYYFIGSDITKSSGSPSDEALGDAEQLFINELISENTHPLPSWLSEDSNWREFLMGTIHQDFDDFEYETGLSVDFGSEGEINFDDNIGKIGLRVSSISETSIKLSEDGLTILGETYSTDDDLYQVLEQGEVRYGLFP
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