Scaffold Ga0209809_1045478

Overview

Basic Information

• Taxon OID: 3300026509
• Scaffold ID: Ga0209809_1045478
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1392
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F002795	Metagenome / Metatranscriptome	529	Y
F059548	Metagenome / Metatranscriptome	133	N
F098761	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209809_10454781	F098761	N/A	REWSSEAARSLTRDMILWGKRGVICVYTSPSFAAVDVRLRRLTQYVYVTAGRYRRGGADYAVYRWHEHPYADDALVERYRFALRLDAWYGVYDTLYGASAGDTLAILPAPAPALAPVRRR
Ga0209809_10454782	F002229	GGAGG	MVTLLTADGVEEVDYTPSDAEIRASLDDPGLYGMVLGVVTWMRLSSGAGWWTVLFGKRLVVTLAPVGWCWVMDGLGDRGYWSSTLSAVVADVCAVYGGCVEED
Ga0209809_10454784	F002795	AGGAGG	MATNDGLVLRGMIAAYREFVSRKDGKTYRVVTVYGDLVAGEDVLCSVDGYDVFVDSPDYSRGEMVAFPARLQFIRDASGRPAVRLYVDEGVR
Ga0209809_10454785	F059548	AGGAG	MPTRREDALWSIVHQRSAHLRALLDGLDGVDIGVTYELDYYPYAI