Scaffold Ga0209809

Basic Information
Taxon OID	3300026509 Open in IMG/M
Scaffold ID	Ga0209809_1029070 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209809_1029070 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1995
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

1995

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005028	Metagenome / Metatranscriptome	414	Y
F008499	Metagenome / Metatranscriptome	332	Y
F018115	Metagenome / Metatranscriptome	236	Y
F032180	Metagenome / Metatranscriptome	180	Y
F085751	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209809_10290701	F085751	GGTGG	MSDIIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAVDWARGVRGVPAGVASACFFILAYVFGALAYRYDLVPTWRFIQPIARDVLSTGAEWLTLFALFLTLLPTLIELATVGLVQRDVR
Ga0209809_10290702	F032180	AGGA	MWWKIESIPHQELEEWTHAVGRFERAAKRDVAVRAAGVFVIYELDGVLGYVAGREAPDGAYLVERWVRKKKGWTLYE
Ga0209809_10290704	F005028	GAGG	MRDDDLRAASQFFAERLRDAEMDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESATVGETYTDPDAAAEAHLGLCWRLDEDVLTVLSDLHRAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKVLERK
Ga0209809_10290705	F018115	AGGAG	MSDEEERFVRWYAHLAADAPLDRHAARALLRRALADREALAEYLLKHECTPALLGEFINRHWNDAISDAPGSAALRLASAVMRVLGRIEDEHDRRAAGWWFQLGIVPSTRVLRQLYVRINDAR
Ga0209809_10290706	F008499	N/A	RRKKMKSRSKSEPRWKRKERDALRALQATFGRVSDPSLARLLTSTGRVGHLTRFGIDGFVGNNPGFAVEVKARRKMLTKPTLDALLLTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERADE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209809_1029070

Overview

Ecosystem & Geography

Associated Families

Sequences