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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026509 Open in IMG/M |
| Scaffold ID | Ga0209809_1018081 Open in IMG/M |
| Source Dataset Name | Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2873 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming: Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.963 | Long. (o) | -110.715 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000353 | Metagenome / Metatranscriptome | 1246 | Y |
| F038253 | Metagenome / Metatranscriptome | 166 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209809_10180811 | F000353 | N/A | MLDMTTHVQVSGTELKVRIEKTLTEKGLKKLITNLEKELDGEHSFLPHDVEAQIRREITSAGVAVSQHGGWYRCIAAYLLLPRLEELLAVKGMGDSRSVAPIVQKLRNEALRESLGAFGLEVPARYARTSRGTGRTRIRLSREQKQQLVENFLDALPTFEALQEVLDNLPKNTNLMVKQIRTLVKRYLSIANRLQSVAVRE |
| Ga0209809_10180812 | F038253 | GAG | MATHDKNMTGVQEELLHLIQSDEARELIENMVDRMAVIEEAYYRIRELREAVQPYIPEDSEHDEEYWLAAYLVKPHASKVIEKFRQLREIQHKLANLEEKVQKMEEEESYLENKLGDLDAAQENMGANIYELVSEDADPYVSLGDSDLYDLLYESIREWAEKQLSTDQS |
| Ga0209809_10180813 | F000353 | GAG | MTHAQVGGTELKVRIEKALNERSLKKLITNLEKELNGEHSFLPHEVETRIRDVLVEAGVAVSQHGGWYRCIAAYLLLPKLEELLQVKSTSEDKNVAPIVQKLRNEALRESLSTFGLEVPARYARTSNGTGRTHVRLSREQKQQLVENFLDALPTFESLQDVLDTLPKNTNLMVKQIRTLVNRYLTIANRLQSVAENE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |