NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1016545

Scaffold Ga0209809_1016545


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1016545 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3079
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041787Metagenome / Metatranscriptome159N
F080998Metagenome / Metatranscriptome114N
F100583Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209809_10165451F100583GGAGGMPQVVENCILRTSFEFIQLARELLQTTPENMLGLQIMPDDNRAHDEYVLLKPRPFAGRVNWRGLNQNARPTRTPFAYEQNACIITPGYWAEFQEIDEQMIRKVAQRGTHSARFDLTDYERELMMDISMKLHQTKESQIWQALVNGYVEERNDEGIAVWSQRYKIIRARFGISACDRQNSTPLADLACIARQVVGV
Ga0209809_10165452F041787GGAGGMSCVNCQCDQPCCFDYCDTRYLLPYCGDPCCVPVALVPNAALRQGSPLTRTADGRYTLFDPTATPPQRFAGILSRDWQTDENGNGIFRNCYPNCNMVEVCMYVNGVFRLRDMTITTDQLNAIVAQGRGYVHGDPNTLSGILQLF
Ga0209809_10165454F080998N/ASGKTQEVCGGRGFVVIPIRMSNPYTIVTSSDPAMLQQVIVPQPLYMRSDNVPDEFRVSSAVTFFFVLHNDHANTLMSVQLRSHGATLLNRAYMDWVKTVAKLGNQLLRIPLDIRALPCKFGAGETVMVGRNQKSPIAVPVFKALRQYKTADELQSDLVPPERFKELLEMADDDMIKQYPAIPAVKIAPTLDEAYAALGAALKDEQQPKALPAEVKLARKVVDEGDYF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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