Scaffold Ga0209809

Basic Information
Taxon OID	3300026509 Open in IMG/M
Scaffold ID	Ga0209809_1016123 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209809_1016123 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3140
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3140

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F031016	Metagenome / Metatranscriptome	183	Y
F074922	Metagenome / Metatranscriptome	119	N
F075805	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209809_10161233	F031016	AGGAGG	MTTITIWKGSRRVVLGDDIEFVEHETFIGEELGAVWEEENSRGTQTVFYRTEGGKIVVHQVLWSRWEGEATHAYIHVFPSLEGVNGAAAMFWRELAQAGLIPPLTVALG
Ga0209809_10161234	F075805	AGGAGG	MRVRVWHGWRAVHNGKDVSRWEWVEFDGEPLGSLVVEVDENRTDERVFYRLSDGRIVVAEHRYGDWEAGGVDYGVVSVYADIDDAARRGWRDDLVRVGAYDAPTLELDEWLSRYDEEE
Ga0209809_10161235	F002982	GAGG	MKITFERTPTAICVVLTDAGECDRIITVARPSDAFDALALDIHTAALKPLDALFSLPRVVCVEIERREGGWRVEVAYWSKGLGTLAQYETDAATLSEALARCVWALAR
Ga0209809_10161236	F074922	AGGA	MVDSMLAQFLNVALDIQQTPAYAGIRVTGGTLAASDGVILVAFKLNSEYIRGEGMIPPATARALAALANEVYLDYVEVDGTAVNLVTREQYADRSELLAVTFPPFACRTVRIETFLPRCLPPHAELVCEAPSLKLVKAARLTDFVELVDKPVRGSELFQLKLPDAKIWYSVRQLREGLRLFRARDTVSVFRNDQGWLSFRDDWGRLFAVTPFVKRD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209809_1016123

Overview

Ecosystem & Geography

Associated Families

Sequences