Scaffold Ga0209809

Basic Information
Taxon OID	3300026509 Open in IMG/M
Scaffold ID	Ga0209809_1005213 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209809_1005213 Open in IMG/M

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7387
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7387

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (91.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005631	Metagenome / Metatranscriptome	394	N
F006418	Metagenome / Metatranscriptome	373	Y
F010840	Metagenome / Metatranscriptome	298	Y
F016404	Metagenome / Metatranscriptome	247	N
F051735	Metagenome / Metatranscriptome	143	N
F074922	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209809_100521310	F005631	GGAG	MRVSVSVDLDNALRKLLPRTARIEAALDAGAAAAHGVMQIYPPPPASSRYRRTGNLRQKLRIKKLSRTSRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAAKKEAIAVLKGR
Ga0209809_10052132	F074922	AGGAGG	MKDTLLAEYLNVAISVQTSAREGVRVTNGTLIASDGVMMVAYKMHVNFLRGEGMIPFATAKALAALAEELYLSGIEVDGTAVNLAVWDQYPNHPERLIVNFPPFACRVLRFESVLPRCMPPEAKLLCEAPSLKLIKTARGEDFVELVDAPKRGDELFRLKSSDAALWYSVRQLRAGLRLFRARDTISVFRNDQGWLSFRDDWGRMFAVTPFVKRD
Ga0209809_10052134	F006418	AGGAG	MNKRRSSPSRGPQTARELVVASGDDYRILFDCVARDYAVEYRGQPVGWRPTEYEARRLVEALRYEDARRGE
Ga0209809_10052135	F051735	AGGAGG	MFRDVTIVNGPVPKDGVADYERLRIKARPLGRPYAWDNGRAWNSYVTNGGFVLVFECEDGTIYVQEIEWEVDPYPDATPDPRTYYYYEVYNSLAEARAGGRGWLIEYALGTE
Ga0209809_10052136	F010840	AGGAGG	VNLPFSQPLDKVTFGALAAATVIILTWALREFAGIDLPAEVQAALAVIIGYVVSYHVPLSEFEAEAIARKYYRNCK
Ga0209809_10052137	F016404	GGA	MTTEELLTDESRAAVLRALLMIALDEGVPASARVAAARLFLSQFDEQSNAERDVLVIFDEAAFVKTV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209809_1005213

Overview

Ecosystem & Geography

Associated Families

Sequences