Scaffold Ga0209809_1003753

Overview

Basic Information

• Taxon OID: 3300026509
• Scaffold ID: Ga0209809_1003753
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9444
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N
F007172	Metagenome / Metatranscriptome	356	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209809_100375311	F002372	AGGGGG	MPTRREDSLWPVVHRRASHLRALLDALDDVDVSIAYELHYYPYAIVELLRVRDDAPPLVLRSAYVQANRQWERHSEFAMRVVEAALQLVHEYRADPSLGGSDSWA
Ga0209809_100375315	F007172	AGGAGG	MTTPTALTALQRRALAAALRAAKRDAYCRAVGGFVIVQMSDGTIDWFPAGQPPHRDGEEDRGAVILGKWRWNYRRWSRIA
Ga0209809_10037534	F001381	GAG	MHYVVATLYVLLWLALAAGAALWLPLWALPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0209809_10037535	F000642	GAGG	VQEIGIALALCAVGAAVWYMRRREAGAGRVRGWLLLYDDVGGWRVLPASYGDAGVVADGVTYPASLPALRVGRELVWIARCDAAALIEHRALERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVSALQALVAQILVLVGDK
Ga0209809_10037536	F002978	AGG	MRDWRVTVVPWADRRLWFVQARRGRRVVWGVVYDAADPESVSLARRAVATLRSAGADCSALPASLPGAPPGAPGA
Ga0209809_10037537	F004024	AGGAG	MHSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYDRIAPIIESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0209809_10037539	F002229	N/A	MGADMVTLLTFDGVEDVDYTPSDAEIRASLDDSGLYGMVLGGVTWMRLSSGAGWWTVIGGRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRSMCGGCVEDEDEEGGDGDG