Scaffold Ga0209809_1003219

Overview

Basic Information

• Taxon OID: 3300026509
• Scaffold ID: Ga0209809_1003219
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10565
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016816	Metagenome / Metatranscriptome	244	Y
F029452	Metagenome / Metatranscriptome	188	Y
F036249	Metagenome / Metatranscriptome	170	N
F050400	Metagenome / Metatranscriptome	145	N
F050402	Metagenome / Metatranscriptome	145	Y
F092114	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209809_100321911	F016816	GGAGG	MNTIYNPITGQWERLDDVLRPFPVIARDTRLIATNNTAPFVPAQGALNIPNHTDIFGNTDSSRANIGIAVGNTSADVVVPDVWRIRRFIILCNRSGSDTTNVNIHCVLWGRLLAPDGTPTIWRQVAVSTDTGSNSTPIRFLVPSSLAGALGYDQYRITFRREPNSDPAPELSLIRVYAEF
Ga0209809_10032192	F050402	N/A	MFSKLPTTRKGAIAERYVCDVLVSSGWHIYTYSADQSHPVDMLAITSDGELVAVEVKCKCARIYYPDTGIDRNDYYAYHNLQSQLNLPVLLLFVDYYSKTVYGNYLNHLSQPKTIVDNQRTLHYPMVTENLVYFPLQSMKHYADIPPAIVAQLNTRTHSKYHHPLPHATDCDGV
Ga0209809_10032195	F029452	GGAG	MIYEYRCPECGWITAVSRWVDQRDVCPRCERCGKLTQRVFPPRAQIVVPRAFSLECAREAGKLVLPSTPEEKRYWDTFGIVDDDGE
Ga0209809_10032196	F092114	GGAG	MRELVSITRHKMEQLLGDNPPKRDTWLLKCRRLREIVGNLPSNQIITTSIPEGHSNMLLINITIKAYAMMQLIRGTVIDFGDDTELFQPKFSEFLSANELALRDAILQRLVVGIGAVCVVGDKQHGWRLQSISPTDLWWDCTTGDVMQPKWIARGYRDSDGNDYREVWYADVFHRYKVGSTDVETLTNPYGVIPIVLLPAHHIPDTVYPIGDVELACPQQFILDEIRRTYLNMARRGAGFFAVKRSSIDESELSRLQNPDEVYILVNEQDAIMPIPTPAPNPEWQALETLAKQDMDALMGISEYVRGVLPTGRAKYATEVVAAVAGQTVRIQAEWYNTKVALERLAMVYYKLHNPTGTAIPRALEDSLSSVNQLMRAEMVGNAPSGNIPVAQSV
Ga0209809_10032198	F036249	GGAG	MQFNPNTSHYASAIGAWLDSNFRDQFTLTVAFMEKLKQRGAFKRGSAYLVQPVFGTGNNTVAGVSNFNTAMSIPADSGLSAVYTWSWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSTVAQFGQVISNDLFTNTDANLGKIAGIPYAVDRPTTSANSFGGISRSNTTNPWWRAVVVDAGNQPLTLQRLAAAYNLATENGGISPDIIVMPTAHFSAFEALLLATQQYRQDDEIARAGFVGYLFKGATVLFDPRVPTNTIFILNSRDIMLVSQTERPSAEPVEFPDRLVRGYKHGWAVALVAKRLNSNARINNITT
Ga0209809_10032199	F050400	N/A	VITVNLYNRYYQPVLERILEPARAVLLLTTDGVYTFTGITPAPLPHNYPIINAIASKHYALPTPTAPPYPSYLRTSKPIAVELCVDTAQSYTIQYQHNGVSQPPITIPALPLPDYPLYQRTPIYPFAHNHLAGYLYDVRIVGSYQSGGMDIAIPNTHSGIITTVCIPLGDTTRLYSAYRNSSGEWKIIIRNPNGNELPNGTNVDTWVRVYVWSYYR