NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209809_1000890

Scaffold Ga0209809_1000890


Overview

Basic Information
Taxon OID3300026509 Open in IMG/M
Scaffold IDGa0209809_1000890 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25664
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (78.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008994Metagenome / Metatranscriptome324N
F036129Metagenome / Metatranscriptome170N
F039500Metagenome / Metatranscriptome163N
F070747Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209809_100089015F070747GAGMTKQEDNVSELDLLRAQTTLLNARVTLFDQKRKEALEKLVNQFCDFYCIPKSRRFDVMRTEEEYRGAICAVLFAVNELNKRGIAVKRVYWDRYGGLLIKLADPKLNEVKIDEEIKQLAKKRRKQNQGWFIV
Ga0209809_100089022F039500AGGAGMEIIESVQTGIERIDETVRDLAELAVAIQRTERMERNAVTLRLLLIARAIEVHKYDVTFKLLTETLSYSDFYAVQLMKLAQEVGEQALMNAVTSGKPLTLAQWQALAEVGQESRNEVIDHVIEDDLPPVEITARATGLDTEEVIITKLLKRLNHLLVQIEKMNARERAVDVLAEHGYVTKIIRNR
Ga0209809_100089035F008994GAGGMRVTRFAVDENGRALFPDYFIVDDNEGIALAMYSANINVQNIIDEGLALTPWLSTQWPGRTVSFNEWRDAFARNGHSFPRYHAQIGERVRLSELVDINRAFVELFMNGMDLTDPLNAETHRQLLTERNIDFFEFMNQK
Ga0209809_100089037F036129GAGGMTRIKLDSVIEALSNQARREQDLSLIERDDAYLNHVINWIMLSGAVQSVQLLKQKRAVLKLDEAVVKELGFDVNS
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Institute for Fundamental Biomedical Research
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