Scaffold Ga0257165_1020132

Overview

Basic Information

• Taxon OID: 3300026507
• Scaffold ID: Ga0257165_1020132
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1120
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000440	Metagenome / Metatranscriptome	1137	Y
F098732	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257165_10201322	F000440	N/A	MRMRTKCTPAQRAAKYLERIAALTGAKQDYDGSYRLTAGRRHFLVNSRFVCVISDHGKSTCFSVVTDPDMPSAEVVASALLQLKDNPRLFKKWRKQPGSTFKANGKMFRYTYQLTRVEI
Ga0257165_10201323	F098732	N/A	RETAAPEQQHNNILEQGLHFLGRAGVAIIAGNHFENGSDRGNSNAEEQRAETYLRRIVALTGATQMGSSYVLDVGNARFHVRNRNVKRISDGADPTWARCATCFHPAHQDMAEAEQIATVLLQLKNNPGLFDSWASKHELAFKADGQMFNRPQ