NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228604_1012072

Scaffold Ga0228604_1012072


Overview

Basic Information
Taxon OID3300026506 Open in IMG/M
Scaffold IDGa0228604_1012072 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 4D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1116
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023607Metagenome / Metatranscriptome209Y
F037677Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0228604_10120722F037677N/AMDMQDIKLGALNFITFMVSFSDIEQWLKLTLLLASIVYTIMKIYNLCKKNDYKIL
Ga0228604_10120723F023607N/AMHIYKLVFDTEQQGKQILIDNNVWEEVTEEGVTSMQYINGTKAVVYIGKVVKTQGTYDPDGHEITPPIYYDGVAYDIMSTDDLDFGDNEVYPADNAVHQFYGYPRNAEVPKN

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