NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255350_1001471

Scaffold Ga0255350_1001471


Overview

Basic Information
Taxon OID3300026502 Open in IMG/M
Scaffold IDGa0255350_1001471 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8136
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048199Metagenome148Y
F067324Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0255350_10014711F048199N/AMTDEEPPPREDRPFDHLSLSDDQAHRVSCAFARPRDLRSLASDALFYSLVLEGRSPRIDEAARTAIRNYVDLTRLLLAALPARAEDLNLKLAALTPPDPLVAEHANLRAMLEAGARADIQRLKLPNPPHWILEWAIT
Ga0255350_10014713F067324GGAMSEDDFDDDGFARPPRPLRPKGKRVKIHQHSQHTVIEFDGPYGPIHIESSTTITVEAIEDDLPPYRFDDGFAQPSPKRLPKARRR

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