Scaffold Ga0255350_1000173

Overview

Basic Information

• Taxon OID: 3300026502
• Scaffold ID: Ga0255350_1000173
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26123
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003389	Metagenome	489	Y
F003942	Metagenome	460	N
F017951	Metagenome / Metatranscriptome	237	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255350_100017318	F003389	GGA	MQITVWSVAADDDNGTNASVHETECAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDSLDEWIHEEVIEPLNTYSVDQHKIDVPTIPSSADDGKHITRRELASVLHGLRLMQEQWEPKMHGCTSIGLHEPLELSEPNSCDHFCDEEDSPLSIDEIDQLCERLNTEICN
Ga0255350_100017319	F003942	GGAG	MLGRRLNPTIHRYEDVELIEVHSEYLECSFMVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEIQRQAGHTIYAENLSAMLYGTGPNHARS
Ga0255350_100017323	F017951	GGAG	MAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKSQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ