NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247592_1140424

Scaffold Ga0247592_1140424


Overview

Basic Information
Taxon OID3300026500 Open in IMG/M
Scaffold IDGa0247592_1140424 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 54R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)577
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039670Metagenome / Metatranscriptome163Y
F058912Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0247592_11404241F058912N/AMGLKDKLAKKILEMKLNKATKHMSGVIQKLQQQFDELVSSDREKK
Ga0247592_11404242F039670N/AMNKLTYLITEGDETYSMEFITDRTASWTESQYLRHRTDCTMNLIAEEPTDETIATARYLLNFE

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