Scaffold Ga0257181_1005695

Overview

Basic Information

• Taxon OID: 3300026499
• Scaffold ID: Ga0257181_1005695
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1487
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257181_10056953	F020766	GGTGG	VTGGIVLFAIMVGAGIVPLIMAFRVKVHSLRILSLLLGLFAITHGFYHLASGFQQEFLADIIFEPISLIFLVGLGAYYSKVAVV
Ga0257181_10056954	F017116	AGGTGG	VSFDIETVFETINLVLILFAFAIFIRLALKGKSLGSFRFQLSIFLLIWVISEIPHIAGSLGLIATTSYQDIGLYLHATSMGVFALFIGWRSLKFVTVRPIPPTGAVAVPTKPPKVLEA
Ga0257181_10056955	F011479	AGG	VNATSFDDLVSQSVIETMSKILGTETWKAINFFFDMKTIVREPETFAALLDKVFGYTSIVLQKKIGETLLGKVGATQQTSSNFDFRQILRIAKSKFPRQALPDQLGP