NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256802_1029057

Scaffold Ga0256802_1029057


Overview

Basic Information
Taxon OID3300026492 Open in IMG/M
Scaffold IDGa0256802_1029057 Open in IMG/M
Source Dataset NameSediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 CS5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.3377Long. (o)-81.4644Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025803Metagenome / Metatranscriptome200Y
F047090Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0256802_10290571F025803GAGMALLRRYWRWLGRWLRLSKPGRALFTAALLVGIAAIVFAHAQGAREGGAPGVVLTLVLAGVVALDAVGRGVVAVARRLSP
Ga0256802_10290572F047090GGAMAVWSLRVGYVGLVVAFAGLALTLFGATKWVLGVGVLVWLGTVAVTMTGFLLARHELREPRPTLWSMRMMLVHDSTHARSLGR

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