Scaffold Ga0257153_1062331

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0257153_1062331

Scaffold Ga0257153_1062331

Overview

Basic Information
Taxon OID	3300026490 Open in IMG/M
Scaffold ID	Ga0257153_1062331 Open in IMG/M
Source Dataset Name	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	757
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.23	Long. (^o)	-122.22	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006192	Metagenome / Metatranscriptome	379	Y
F007873	Metagenome / Metatranscriptome	343	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257153_10623311	F006192	GGAG	MAENKQLVVYAAAYETVDAALADLDAIEQLHKDQVI
Ga0257153_10623312	F007873	GGA	VSSSVEAIILAGDVAAGDVIVLPDARDAVLVKQVRLGKGGFILTVVPVADDRPGMERLVTVTAEIRLRKTSR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.