Scaffold Ga0257153_1001301

Overview

Basic Information

• Taxon OID: 3300026490
• Scaffold ID: Ga0257153_1001301
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4575
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019403	Metagenome	230	Y
F021420	Metagenome / Metatranscriptome	219	N
F035926	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257153_10013014	F035926	GGAGG	MRTRIFAPILFCALCFIVRGDAQSSDIDEKPVWTLEFIDVRSNNMGLALGYLDDHWMRVREEAKRQGAVLSYHRISEMLLVTPGSKTGDPNSIVLLTEYRNLAAFSGREKLFASIRERLPSSTPGVIPIKREGLYDTVETRVLIEQPVEDNATQFKLLAKQ
Ga0257153_10013015	F019403	GGAG	MAISFQSDEEVLRKLRDKLREMTDEELVRFGKEVRRLAENPFQRQLDEARAEWKRRKRFP
Ga0257153_10013016	F021420	GGAGG	MSEVLEGLLQKRASLSAELRALDAGISAYRHALNGAAPQTKSAAIVSGTRPTMSLAARKKLSLLAKARWAKKRKEDKK