Scaffold Ga0257153_1000417

Overview

Basic Information

• Taxon OID: 3300026490
• Scaffold ID: Ga0257153_1000417
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6831
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004480	Metagenome / Metatranscriptome	436	Y
F012382	Metagenome / Metatranscriptome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257153_10004171	F012382	AGGA	VLSEVAEKGKTVLNNVEGIDQDLSRCCSVSGRVTELFELPGRIDKFCLECSGDVATAILLATEIDAGTLTGRNTSALVSEFAEIGGRMLERAQSAQ
Ga0257153_100041710	F004480	AGG	MRSRASRIAATLALLTCFVCPLVETFDNWDHSMQTGNDTEYGLVVLALCVGVAYSLARFIFRSASLGFAAKSVFARCFLKSFLSTASSFTFLLFDATSPPSLPLRI