Scaffold Ga0228620_1020792

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228620_1020792

Scaffold Ga0228620_1020792

Overview

Basic Information
Taxon OID	3300026483 Open in IMG/M
Scaffold ID	Ga0228620_1020792 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Monterey Bay, California, United States - 23D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1668
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002512	Metagenome / Metatranscriptome	553	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228620_10207923	F002512	GAGG	MSKEMKQDEIDFINKMFETPNAFTKWKFMQTPHFDKLPDAVRYTVEKECLTHYFNVLTDGMPDWKLPISGTIPISLLNPFRAAVEYFTGTELNVIEQDGTDFKVFARGYYLMGEDAPKGEMFN

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