Scaffold Ga0257172_1012188

Overview

Basic Information

• Taxon OID: 3300026482
• Scaffold ID: Ga0257172_1012188
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1435
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003738	Metagenome / Metatranscriptome	471	Y
F078280	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257172_10121881	F078280	GAGG	MTLGGIVRMILFGFLAPGVAAQMSRQSPPSPEHGTEPNPRSSQAKPQVELRRFSLLSGASIDVSPDWIEREQMPLPPSPRLAPFAPQVTFLEFTALENPKRHSVLRIAATTNPFLGSDEVALDEQMHGAAGSGSGLADYLFYFFFSPPRDCLDGGSEAYRKAKSQAELPDQTTVSPDLSIRTDCKHAPTLADFYSRQLSPGVLFQVTNGVELASGIYPEFYLTPMEKVEANGLTFYVFEAQGRMRLDLAAVDRFNLPD
Ga0257172_10121882	F003738	N/A	GDMENKTVVWTNDDLEKLHSLGLISIVGPIDEERPTSASAPAPYVRTQDPEWYAEQAAKLRDELERRRAQLREYRQALEDARSLRETTGGINLDEGDVGITPEAGIEILQQRLNEAQTELHALEDLARRHGIPPGTLRGE