Scaffold Ga0257177_1011287

Overview

Basic Information

• Taxon OID: 3300026480
• Scaffold ID: Ga0257177_1011287
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1187
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015579	Metagenome / Metatranscriptome	253	Y
F019106	Metagenome	231	N
F097102	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257177_10112871	F015579	GGGGG	LGSDSKKPPRPRHRFSFSGQSKKPEGPGRPREANVTRNDILNSLTKYAHPQEGQVKEAVEIQDPVQVPDSDQRAIPARTRNRGSARGALVVFLGGFLAVWLYGYATGAYEIPYLRGVTESPEVQVGAQLVSSSPILFGAVSVSVLLGALYLRHRKKN
Ga0257177_10112872	F097102	GAGG	LEIEVYNCGCKVRIYEVEFGESKNDLTERPSLISDYNPCSKHRYARMIPPREARLLKVRGEHEAFLNE
Ga0257177_10112873	F019106	N/A	MASQVPLLTLARFLVLIGGIVLLVSGILEAANVGGLMDLGTNLARLGSLTGIVVGILVGILALVGSREVANPAWSLILLILGLFVGSLGGILVFIGGLIGLVSHYVKV