Scaffold Ga0228622_1018679

Overview

Basic Information

• Taxon OID: 3300026479
• Scaffold ID: Ga0228622_1018679
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 26D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1984
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047926	Metagenome / Metatranscriptome	149	N
F051114	Metagenome	144	Y
F058949	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228622_10186792	F051114	N/A	MRNEAIDKVLEHNAQLFQNLGTDSSKAEVQAAKIQERKNLRSVRHYNPELIDRLINDGDK
Ga0228622_10186794	F058949	N/A	MFDNNSYEYKKAIRAKAAKAFGPTIKLDLFLEFIGFWDAREYKNANDIRTEAKDMHLNKVVSFMNQYTDG
Ga0228622_10186796	F047926	N/A	MWIEIAKNTWAEARDKKDAERIKKKWKDYKKKQGDLTSRHYIVNYIENENTIK