NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228622_1002937

Scaffold Ga0228622_1002937


Overview

Basic Information
Taxon OID3300026479 Open in IMG/M
Scaffold IDGa0228622_1002937 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 26D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6634
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009889Metagenome / Metatranscriptome311Y
F021435Metagenome219N

Sequences

Protein IDFamilyRBSSequence
Ga0228622_100293713F021435N/AMKCPQCTEPIKWQEQHEYEDFNLEAEGIINVHFCTNIDCNVEEVYIFQKDDATL
Ga0228622_10029372F009889AGAAGMRIYSLICVLTLFSCSANYHYQKALKKGLKPLISSDTIRIATIDSVPIVVHDTIVYEKYFSSKDTIVHYENVFVPKTRLETRIEYKIHRDTIRYETRVEVQKAKASKEPNYLLWVFLIVLVLAAMQLIKKFI

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