NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257154_1005151

Scaffold Ga0257154_1005151


Overview

Basic Information
Taxon OID3300026467 Open in IMG/M
Scaffold IDGa0257154_1005151 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1684
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007873Metagenome / Metatranscriptome343Y
F009816Metagenome / Metatranscriptome312Y

Sequences

Protein IDFamilyRBSSequence
Ga0257154_10051512F007873GGCGGVEDVVFAGDVNAGDVVVLPGASSAVLVKTVRLGQGGFIFTVAPVDDDRPQAEQLVTLTASARLRKHGRDLTN
Ga0257154_10051514F009816GGAGGMRWRQTFMTEVFESLQQLGLRACPVCGSAESLNMSPFPVVLLDADFPSGAEALNLGEERGDLTFSVRVECGTCGHLMLFNAQRFRTGDEKIIEGRIRY

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