Scaffold Ga0257154_1000322

Overview

Basic Information

• Taxon OID: 3300026467
• Scaffold ID: Ga0257154_1000322
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4457
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061340	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257154_10003223	F061340	N/A	MNLTTNQITFLRDVHSSVKVDMTSGXRYHHFDDFTIQELSSFIRIIGDEKIYLLIPLFASSKSLSDATLNLSEPFLVDNESNPALIIKFILDQXNSSGFSRKQDCLITFSFKFKRVXLSY
Ga0257154_10003224	F061340	N/A	MNLTINNISFLKDLDNNIKVDMRSGXRHHYIDASNLIEITSFIRLIGEDKIYLIIPLFCTSQSLSLPTLNLSEPFLVNNNSNSSLIIKFIIDQYKSSGFTIEEHTTIIFAFKFKRVXFSD