Scaffold Ga0257154_1000176

Overview

Basic Information

• Taxon OID: 3300026467
• Scaffold ID: Ga0257154_1000176
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5356
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004702	Metagenome / Metatranscriptome	427	Y
F019512	Metagenome / Metatranscriptome	229	Y
F045234	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257154_10001762	F045234	GGAGG	MCPACIASAALIITGIMSTGGLTALAAKKLHAKNVANDRGSFDSESRKDVQSKSDTHGKEQP
Ga0257154_10001765	F019512	AGGA	MRMYRATSLAALALIMLLGPSGCGHSSSDSSANEEIPGLTSADRDAQRAAMAELQRHWLKGSDGWTTAIVSGSPYAPDHFLRQCRTLTIKEMEPQDLSESDKLNGFEWVGRANFQPTSCREAGGQTSMVLDGMSNVVVSKHSGQWSQWVDFTPGPLRFAREKGRWQFNWDATYLRGTLPGPQDFANAGVH
Ga0257154_10001766	F004702	AGGAG	MNGTAIRTALLVLVLAGATLAIGCGGGAEGKYRDPSGTINAEFKDGKAYVALGAYAVDGTYKIEGDKIVARGDFGPMLPSPLVFTINKDGTIDGPRNSMIPRLEKAK