NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255351_1021473

Scaffold Ga0255351_1021473


Overview

Basic Information
Taxon OID3300026456 Open in IMG/M
Scaffold IDGa0255351_1021473 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1603
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040983Metagenome160N
F044277Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0255351_10214731F044277N/AACEFLIMQNLIFHISLPKGIKLMNGATLMKDVTFDFISQITPYYSTIDMVRLAAGPTLKKLSDITIACQIYRSSNEADLITAARVPLSGLQHTRLIGSRLQYVTALASRDLMLNVVSLLGPGAHVLANFSVDRKADNKQRLAEFEESLKLYEVVLRSGGRVMPGGRPDFHFAAKGVLDWAERTPARTWFANGMGANASSMDPGSPTGGRGKPIKFFASPTCSPPMSSMRIGVYQPGFPVSQFYPYAMGQ
Ga0255351_10214732F040983GGAGVDFYRDISATIDLREELHSVIHGSEEIVGQGRTVILRRMTNTTCPGCWDPKTGGSVRPNCRYCQGEGWQFYETQEIMALYRGVAPVYKPGVLATGEYPQNAMGYTDQNRCTAYLEFFRDDGSQVYPDYERYTLQTAKAYDKLYETKVDPEGNPITDSSGRFTRTVKWKVLSVVPTFGDNGRIEMFELGLEKENV
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