NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255351_1019988

Scaffold Ga0255351_1019988


Overview

Basic Information
Taxon OID3300026456 Open in IMG/M
Scaffold IDGa0255351_1019988 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1691
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032513Metagenome179N
F060535Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0255351_10199881F032513GAGMANPFYLIWQEGSTVLEGYANGDWIDGQLTFPIVFPGVTTAAQALSLSSSASVNLTFETLINVAFYLTGSDAPVVQGKWPYLTDAYGNATPAVTGGVEISFDNGLTWNRFSNTVGLASIPSTWLALPQEAVGSVGMAGQIGAFDTAHMLVRYVIPPSVTLTKILDVQLQVDCDVV
Ga0255351_10199882F060535N/ASNTASYAIRFLTQNGYQVLPPYEAPSYLPWFPRVRFSLQPPALEYPIQSFLPTRPYLLGYWIPGTVLGPNLIQFDRPQIYNDPNQLPDIVVFDSNQNVKYAMDGSANGEPETHGTLYPWKRNQISDVDPFMGRVEVVPTVDTTDTVYGFYSYFEPDVVYTALDVNPVTNPSIKNTVICFYYRAASNPLQEIYHQVFNETGPIAGMTNDPNPPTWTGQVPSSGTVIAEMVVGVSFGIATFEMTDARARGGGLAPAYQTIPQADNFWDLGYLDGRPYPVGGALVVYLPTRILNTMTRAVVAGIVNSVLPMGTIAAIRYYDPEGNESV
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Institute for Fundamental Biomedical Research
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