Scaffold Ga0255351_1003309

Overview

Basic Information

• Taxon OID: 3300026456
• Scaffold ID: Ga0255351_1003309
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5568
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098525	Metagenome	103	N
F104342	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255351_100330910	F104342	AGGAG	MANPLDRTLDKTGRLDDETILVLESVLCDIHPPINPAVLLLAMRNWYLVYGSGPIIRACTDWFIQVVQLDTHRSDLYDCYREGQALFTEKTGIDLAERVGAR
Ga0255351_10033093	F098525	GAG	MSLNAALNATIALIENRPAQFREMLREPTSDVKNISPVYSRMIRSLNFYAATKIRIALMAALHVQPTEEQLNACPDYTKATRADFERSFFDGVTAVEKVFEGILNMLEEKE