Scaffold Ga0255351_1002838

Overview

Basic Information

• Taxon OID: 3300026456
• Scaffold ID: Ga0255351_1002838
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6157
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036061	Metagenome	170	N
F064338	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255351_10028381	F064338	GGAGG	MATSGLIPIPEDLALFPVPTENVNGLLATSEDLGLTVEEKQELDNYQSALRILGPAAGAVLMCPGNQENVADEDKCPYSSKCPLLRMHKAPADKMCPVERMIVEERFNAWCRELFTDPVLAKESDRVAISDLCWIDLQMQRSLHILSKGDEARLTVTNPKDVHPETFLPISWEKVIHPNVELLVTLQTQRRMILKDWMLTPEQKWKREKAEGKGSGKDIASKQSARADKLRAIKSSNED
Ga0255351_10028384	F036061	GGAGG	VLDNSDNPAIAQEGVHAEETPTNLFSDPPFGHLFAELTDLAAATAAGFRTVLVPPDTPLFCFYCHDTEALEYRLRRKAGKYVALCHRPGTIEGCWNRDVAPMCEYKNHEAVQCDQVAEWVVAFGKDMLMRTHRCLIHVPPALSDVSEHRVFPI