Scaffold Ga0247845_1003479

Overview

Basic Information

• Taxon OID: 3300026451
• Scaffold ID: Ga0247845_1003479
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2649
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0466
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002283	Metagenome	574	Y
F036047	Metagenome	170	Y
F083513	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247845_10034791	F002283	N/A	IQVLPPNQSLKLTEPAVDDFARAKQPATVGRDLPHADWIPSLRHFVAAA
Ga0247845_10034793	F083513	GGA	MFITKIKNETFLTRSFVQLNQLTLPPNQSLKLTEPAVDDLARAKQPSTIGLDIPRADWLPSPRRFAAAA
Ga0247845_10034794	F036047	GGA	MSINSINNDNILNTKRNPSSPSPLPPNQSLKLTEPAVDDFARAKQPATVGRDLPRADWIPSLRHFVAAA