NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247559_1012206

Scaffold Ga0247559_1012206


Overview

Basic Information
Taxon OID3300026443 Open in IMG/M
Scaffold IDGa0247559_1012206 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 4R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1734
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011229Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0247559_10122062F011229N/AMVLRAVVTLATLPLANGQADGNPHGWDRIRRCDHVDYDPPCGVCEGVGGYAASDEANDYTPASCREEGPYDGSTRKRPVWGPDFTELKSHEILIGKKTDPACFQAFPSNDSTATNCYKPQEVQIFSEMNNYRALILTANQAGNAWGVAGNVSSVIYHQGPNMWIVNVLGRLGLVNQCVCTSPREGGDPAKPEVGPVQYNWVDNLFYVSTETIGVEYGVGEMALDHWAFGPHHAWTDPNTGIIVRMWQPFNGLQVFEPGAWSEGHAVDDAVVEGWFGAKTRLFDQLSTDGSKAPDWCTKSAPINTFRIKCQDNGFPQVSNGNVPSHVEMASAPVGDDKADARDLRRAKSKVPRDEYKGDDFTSMSATLNEYLLRHAPNSKDCDRWTVEELQELQLSLIMLRDSKLNDLYHDMNDRRKIEKDVQKLVGEWEELNRKAASDPDLAKAHRDGHCHEAVMWYVHHLPHGMKDVLSSKISLPLLSAMQHEAKHVTHGSEVHASYQEKVSCASCHSFTYPAITV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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